BtaEX6068395 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007307 | SELE
Description
Bos taurus selectin E (SELE), mRNA. [Source:RefSeq mRNA;Acc:NM_174181]
Coordinates
chr16:38187191-38188958:-
Coord C1 exon
chr16:38188776-38188958
Coord A exon
chr16:38187478-38187663
Coord C2 exon
chr16:38187191-38187379
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTTCAAATCCCTAGTGG
3' ss Score
7.21
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTGTGACCTGTCCAGCACAGAAACATCCTGAGCATGGACATCTGGTTTGCAACCCTTTGGGGAAATTCACCTACAACTCTTCCTGCTCCATCAGCTGTGCAGAGGGCTACCTCCCAAGCAGCACAGAGGCCACTCGGTGCATGTCCTCTGGAGAATGGAGCACTCCTCTCCCAAAATGCAATG
Seq A exon
TGGTTAAGTGTGATGCTTTGTCAAATCTGGACAATGGAGTGGTAAACTGTTCCCCAAACCATGGAAGCCTCCCATGGAACACCACCTGTACGTTTGAGTGTCAGGAAGGATATAAACTCACTGGACCCCAGCACCTACAGTGTACCTCCTCTGGGATTTGGGACAACAAGCAGCCAACATGTAAAG
Seq C2 exon
CTGTAAGCTGTGCAGCCATCAGCCATCCTCAGAACGGCACTGTGAACTGTAGCCACTCCGTGGTTGGAGACTTTGCCTTCAAGTCATCCTGCCACTTCACCTGTGCAGAGGGCTTCACGTTGCAGGGGCCAACCCAGGTTGAATGCACTGCCCAGGGACAATGGACACAGCGGGTCCCAGTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007307-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(93.7=95.2)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGCATGGACATCTGGT
R:
GGCAGGATGACTTGAAGGCAA
Band lengths:
251-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]