MmuEX6028817 @ mm10
Exon Skipping
Gene
ENSMUSG00000026582 | Sele
Description
selectin, endothelial cell [Source:MGI Symbol;Acc:MGI:98278]
Coordinates
chr1:164050644-164052013:+
Coord C1 exon
chr1:164050644-164050832
Coord A exon
chr1:164051537-164051722
Coord C2 exon
chr1:164051825-164052013
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTTCATCTCCTCAGTGG
3' ss Score
9.27
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGTGACTTGCAAACCACAGGAACACCCTGACTATGGAAGCCTGAACTGCTCCCACCCGTTCGGCCCCTTCAGCTATAATTCCTCCTGCTCCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTGGAGAGTGGAGTGCGCCTGCTCCAGCCTGCCATG
Seq A exon
TGGTTGAATGTGAAGCTTTGACCCACCCTGCCCACGGTATCAGGAAATGTTCCTCAAATCCTGGGAGCTACCCATGGAACACGACATGCACGTTTGACTGTGTGGAAGGGTACAGGCGAGTTGGAGCTCAGAATCTACAGTGTACCTCATCTGGCATCTGGGATAACGAGACGCCATCATGCAAAG
Seq C2 exon
CTGTGACCTGTGACGCCATCCCTCAGCCTCAGAATGGCTTTGTGAGCTGCAGCCACTCAACAGCTGGAGAACTTGCGTTTAAGTCATCCTGTAACTTCACCTGTGAGCAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026582-'1-13,'1-4,5-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(93.8=95.3)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCTGACTATGGAAGCCT
R:
CGCAAGTTCTCCAGCTGTTGA
Band lengths:
244-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types