RnoEX6045133 @ rn6
Exon Skipping
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82357816-82359154:+
Coord C1 exon
chr13:82357816-82358004
Coord A exon
chr13:82358678-82358863
Coord C2 exon
chr13:82358966-82359154
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTCATCTCCTCAGTGG
3' ss Score
9.37
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TTGTGACCTGCCAAGAACAGGAATACCCTGACCATGGAAGCCTGAACTGCACCCACCCATTCGGCCTCTTCAGCTATAATTCATCCTGCTCCTTCAGCTGTGAAAGGGGCTATGTGCCCAGCAGCATGGAGACCACAGTGCGGTGTACGTCCTCTGGAGAGTGGAGTGCACCTGCTCCTGCCTGCCATG
Seq A exon
TGGTTGAATGTAAAGCTTTGACCCAACCTGCCCACGGAGTCAGGAAATGTTCCTCAAATCCTGGGAGCTACCCATGGAATACAACGTGCACGTTTGATTGTGAGGAAGGGTACAGGAGAGTTGGAGCTCAGAATCTACAGTGTACCTCATCCGGTGTCTGGGACAACGAGAAGCCATCGTGCAAAG
Seq C2 exon
CTGTGACCTGTGATGCCATCCCTCGGCCTCAGAATGGCTCTGTGAGCTGCAGCAACTCAACGGCTGGAGCGCTTGCCTTTAAGTCTTCCTGTAATTTTACCTGTGAGCACAGTTTCACATTGCAGGGCCCAGCCCAGGTTGAATGCAGTGCACAAGGGCAGTGGACACCACAAATCCCAGTGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACCATGGAAGCCTGAAC
R:
AGACTTAAAGGCAAGCGCTCC
Band lengths:
249-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]