BtaEX6069259 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50801942-50803026:+
Coord C1 exon
chr16:50801942-50802070
Coord A exon
chr16:50802159-50802287
Coord C2 exon
chr16:50802898-50803026
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGAGCCAGTGCCCCTTCCAGGGT
3' ss Score
3.43
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCTGTCCCCCCGGCTTCCATGGGGCTGGCTGCCAGCAGACGTGCCAGTGTCAGCATGGCGCCCCCTGCGACCCTGTCAGCGGCCAGTGCCTCTGCCCTGCTGGCCTCCATGGCCAGTTCTGCGAGCGGG
Seq A exon
GGTGTGAGCCGGGCTCGTTCGGAGAGGGCTGCGGCCAGCAGTGTGACTGCGAGCTTGGGGTGCCCTGTGACCCCGTCACCGGCCACTGCCTGTGCCCCCCTGGGCGCACAGGGACCACCTGTGACCTGG
Seq C2 exon
GCTGCAGGAGGGGCTTCTTCGGGCCGGGCTGTGCCCTGCACTGCTCCTGTGGGGGTGGAGCCGACTGCGACCCTGTCAGCGGGCAGTGCCTCTGCGTGGACGGCTACACAGGGCCCACGTGCCGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'39-42,'39-41,40-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCATGGGGCTGGCTG
R:
CACGTGGGCCCTGTGTAG
Band lengths:
237-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]