MmuEX0028597 @ mm10
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154270402-154271739:+
Coord C1 exon
chr4:154270402-154270530
Coord A exon
chr4:154270623-154270751
Coord C2 exon
chr4:154271611-154271739
Length
129 bp
Sequences
Splice sites
3' ss Seq
GATCCCATTGCCTCCACCAGGGT
3' ss Score
5.31
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CCTGCCCTGCCGGCTTCCATGGATCTGGTTGCCAGAGAGTTTGCGAGTGTCAACAGGGCGCTCCCTGTGACCCTGTCAGTGGCCGGTGCCTCTGCCCTGCTGGCTTCCATGGCCAGTTCTGCGAGAGGG
Seq A exon
GGTGCAAGCCAGGCTTTTTTGGAGATGGCTGCCTGCAGCAGTGTAACTGCCCCACGGGTGTGCCCTGTGATCCCATCAGCGGCCTCTGCCTTTGCCCACCAGGGCGTGCAGGAACCACATGTGACCTAG
Seq C2 exon
ATTGCAGAAGAGGCCGCTTTGGGCCGGGCTGTGCCCTGCGCTGTGATTGTGGGGGTGGGGCTGACTGCGACCCCATCAGTGGGCAGTGCCACTGTGTGGACAGCTACACGGGACCCACTTGCCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'49-50,'49-47,50-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(37.0=38.6),PF0005319=Laminin_EGF=WD(100=65.9)
A:
PF0005319=Laminin_EGF=PD(34.8=36.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTCCATGGATCTGGTTG
R:
GGCAAGTGGGTCCCGTGTAG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types