DreEX6080179 @ danRer10
Exon Skipping
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21197787-21201735:-
Coord C1 exon
chr23:21201607-21201735
Coord A exon
chr23:21201392-21201520
Coord C2 exon
chr23:21197787-21197915
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTATGTGTGTATCAGGCT
3' ss Score
5.39
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
CATGTCCATTAGGGCGTTATGGTCAGGACTGTGCTGGAGTGTCTCTGTGTGGTGAAGGGGCTCGCAGTGACCCTCTCACAGGCAGATGTGTGTGCAGGGCTGGTCAGCGTGGACGGGACTGTGGGAAAG
Seq A exon
GCTGTGCTGAGGGCTGGTTTGGAGAGAATTGTGATCAGCGCTGTAACTGCAGCAATGGCGGAGTGTGTGACGCTCTTACAGGACACTGCAGCTGTACACTGGGCTGGACAGGAGACACCTGTGAGGAAG
Seq C2 exon
TGTGTCCCAGAGGACGGTATGGTTCAGACTGCAGTGAAGTGTGTGACTGTAAGAATAACAGCACATGCGACCGAGTGACTGGCGTCTGTCTCTGCTCTCCAGGTTTCTACGGACATCTATGTCAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199-'33-29,'33-28,34-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=70.5)
C2:
PF0005319=Laminin_EGF=PU(71.7=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCCATTAGGGCGTTATGGT
R:
TCCGTAGAAACCTGGAGAGCA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]