DreEX0045927 @ danRer10
Exon Skipping
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21201392-21208719:-
Coord C1 exon
chr23:21208591-21208719
Coord A exon
chr23:21201607-21201735
Coord C2 exon
chr23:21201392-21201520
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCTCTCTGTTTGCAGCAT
3' ss Score
10.8
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
Exon sequences
Seq C1 exon
AATGTGAAGCGGGCCGTTATGGACCCAACTGTGAGCAGGAATGCCAGTGTCTGAATAACGGTGTATGTAAAAGCAGCACTGGCACCTGCAGCTGCCCACCGGGATTCATCGGACCAAACTGCAACATCA
Seq A exon
CATGTCCATTAGGGCGTTATGGTCAGGACTGTGCTGGAGTGTCTCTGTGTGGTGAAGGGGCTCGCAGTGACCCTCTCACAGGCAGATGTGTGTGCAGGGCTGGTCAGCGTGGACGGGACTGTGGGAAAG
Seq C2 exon
GCTGTGCTGAGGGCTGGTTTGGAGAGAATTGTGATCAGCGCTGTAACTGCAGCAATGGCGGAGTGTGTGACGCTCTTACAGGACACTGCAGCTGTACACTGGGCTGGACAGGAGACACCTGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199-'32-28,'32-27,33-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(30.8=36.4),PF126612=hEGF=WD(100=29.5)
A:
NO
C2:
PF079748=EGF_2=WD(100=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGAAGCGGGCCGTTATG
R:
CTCCTGTCCAGCCCAGTGTA
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]