GgaEX7010106 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1026521-1027117:+
Coord C1 exon
chr21:1026521-1026649
Coord A exon
chr21:1026774-1026902
Coord C2 exon
chr21:1026986-1027117
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTGGATGCTCCCTTCCAGGTT
3' ss Score
8.47
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGTGCCCAGCCGGGAGCTTTGGTGCTGACTGCCAGCTGCGCTGTGCCTGCAGGCACAATGCCACCTGCGACCCCACCACCGGCGCCTGCCGCTGCCCCCCGGGACGCTATGGGGCCCTGTGTGAGCACG
Seq A exon
GTTGTCCCCCGGGTTTCCATGGGACCGACTGCCAGCAGCACTGCGACTGTGCCCATGGAGCTGCATGTGACCCGGCCACCGGCCACTGCCACTGCCCCGTGGGGCTGCGGGGTCACCGCTGCCAGGAAG
Seq C2 exon
CAGGCTGCGAGGAGGGGACGTATGGGGAGGGATGCCGGCAGCGCTGTGACTGCGTGGGGAACGCACCCTGTGACCGCATCACGGGGCACTGCCTCTGTCCTCCGGGAAAAACCGGCCCCCGCTGTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'40-49,'40-48,41-49=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCTTTGGTGCTGACTG
R:
CTGAGTCACAGCGGGGGC
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]