MmuEX6098368 @ mm9
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:153644002-153644860:+
Coord C1 exon
chr4:153644002-153644130
Coord A exon
chr4:153644511-153644639
Coord C2 exon
chr4:153644732-153644860
Length
129 bp
Sequences
Splice sites
3' ss Seq
TAACTCGGATCCCTCTCCAGCCT
3' ss Score
5.43
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CCTGCCCTGCTGGGCGCTATGGTGCTGCCTGCCTCCTGGAGTGTTCCTGTCAGAACAATGGCAGCTGTGAGCCCACCTCCGGCGCTTGCCTCTGTGGCCCTGGCTTCTATGGTCAAGCTTGTGAAGACA
Seq A exon
CCTGCCCTGCCGGCTTCCATGGATCTGGTTGCCAGAGAGTTTGCGAGTGTCAACAGGGCGCTCCCTGTGACCCTGTCAGTGGCCGGTGCCTCTGCCCTGCTGGCTTCCATGGCCAGTTCTGCGAGAGGG
Seq C2 exon
GGTGCAAGCCAGGCTTTTTTGGAGATGGCTGCCTGCAGCAGTGTAACTGCCCCACGGGTGTGCCCTGTGATCCCATCAGCGGCCTCTGCCTTTGCCCACCAGGGCGTGCAGGAACCACATGTGACCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGTGCTGCCTGCCTC
R:
CTAGGTCACATGTGGTTCCTGC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: