BtaEX6069266 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50797838-50798688:+
Coord C1 exon
chr16:50797838-50797966
Coord A exon
chr16:50798220-50798348
Coord C2 exon
chr16:50798560-50798688
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACCCGCCCCGTCTCTGCAGAGT
3' ss Score
10.41
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CCTGCCCAGAGGGCCTCTATGGTGAGGACTGTCAGCACTCCTGCCTGTGCCAGAATGGGGGCAGCTGTGACCCTGTCTCAGGACACTGCACCTGCCCAGAGGGCTGGGCCGGCCTGGCCTGTGAGAAGG
Seq A exon
AGTGCCTCCCGGGGGTCTTTGAAGTTGGCTGCCCGCACAGCTGCGGGTGCCTCAACGGTGGCCTCTGTGATCCGCACACCGTCCACTGCCTCTGCCCAGCCGGCTGGACCGGGGACAAGTGCCAGAGCT
Seq C2 exon
CCTGTCCCGAGGGCACCTTTGGGGTCCTCTGTGAGGAGCGCTGCGCCTGCCGGTGGGGGGCCGCCTGCCACGCCGTCACTGGGGCCTGCCTCTGTCCCCCGGGGTGGAGGGGCTCGCGGTGTGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'28-32,'28-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126612=hEGF=WD(100=29.5)
C2:
PF0005319=Laminin_EGF=PU(70.8=77.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGGCCTCTATGGTGAG
R:
CTCTCACACCGCGAGCCC
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]