GgaEX1035874 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:995445-996796:+
Coord C1 exon
chr21:995445-995573
Coord A exon
chr21:995681-995803
Coord C2 exon
chr21:996668-996796
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTTGCTCTCTCCTAGCGT
3' ss Score
9.58
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CATGCCCAGAGGGGTTCTATGGGACAGGCTGCCACCAGCATTGCCTGTGCCAGAACGGGGGGACATGCGACCCCACCACGGGGCACTGCATCTGCCCAATGGGATGGACTGGGCTGGCCTGTGAGCTGG
Seq A exon
CGTGCGCTGAGGGGCACGGGGACGGCTGCGGGCAGCGCTGCGCCTGCCTGAACGGGGGGGTCTGCGACCCACAGGGACAGTGCCAGTGCCCACCTGGGTGGAGTGGGAGCAGCTGTGAGAGCC
Seq C2 exon
CCTGCCTGCCCGGAGCGTTTGGGAAGAGCTGTGCTGAACGCTGTGCCTGTCCCCCCGGAGCACCCTGTGACCACATCACTGGGCAGTGCAGCTGCCCACCGGGCTTCACCGGAGCTGCATGCGAGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'23-25,'23-23,24-25=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.5)
A:
PF126612=hEGF=WD(100=31.0)
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTATGGGACAGGCTGCCAC
R:
GTGTCTCGCATGCAGCTCC
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]