GgaEX1035874 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1023911-1025035:+
Coord C1 exon
chr21:1023911-1024039
Coord A exon
chr21:1024147-1024269
Coord C2 exon
chr21:1024935-1025035
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTTGCTCTCTCCTAGCGT
3' ss Score
9.58
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CATGCCCAGAGGGGTTCTATGGGACAGGCTGCCACCAGCATTGCCTGTGCCAGAACGGGGGGACATGCGACCCCACCACGGGGCACTGCATCTGCCCAATGGGATGGACTGGGCTGGCCTGTGAGCTGG
Seq A exon
CGTGCGCTGAGGGGCACGGGGACGGCTGCGGGCAGCGCTGCGCCTGCCTGAACGGGGGGGTCTGCGACCCACAGGGACAGTGCCAGTGCCCACCTGGGTGGAGTGGGAGCAGCTGTGAGAGCC
Seq C2 exon
CCTGTCCAGAGGGGCACTTTGGGGCGGGCTGCCAGGAGCGCTGTGACTGTGGGGACAAAGGGCTGTGCAACCCCATCACCGGCACCTGCCAGTGCCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'29-34,'29-33,30-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.5)
A:
PF126612=hEGF=WD(100=31.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGGTTCTATGGGACAGG
R:
CAGGTGCCGGTGATGGGG
Band lengths:
211-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]