BtaEX6069280 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50785584-50786885:+
Coord C1 exon
chr16:50785584-50785703
Coord A exon
chr16:50786060-50786182
Coord C2 exon
chr16:50786715-50786885
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCCCTGGGTTTGCCCGCAGACG
3' ss Score
10.68
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ACGTCGACGACTGTGCCGCCTCCCCCTGCTGCCAGCAGGTTTGCACCAACAGCCCCGGTGGCTACGAGTGCAGCTGCTATGCTGGCTACCGGCTCAGTGCGGATGGCTGCGGGTGTGAGG
Seq A exon
ACGTGGACGAGTGCGCCTCTGGCCGCGGTGGCTGCGAGCACCACTGCGCCAACCTGGCCGGCTCCTTCCAGTGCTCCTGTGAGGCCGGCTACCAGCTGGACGAGGACCGCAGGGGTTGCACCT
Seq C2 exon
CCCTGGAGCTGCCCGAGCTGGTCCTGGACGGCCACCTCCCCCTCGGGCGCCCCCCTCTGCACGTCGCGGTGCTCCAGGACGAGCTGCCCCACCTCTTCCAAGACGACTACGTCGGGGCTGAGGAGGAAGAGGCCGAGGCACGGGGCGAACACACACTGCAGGAAAAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'13-15,'13-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.207
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.4),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGCACCAACAGCCCC
R:
TTTCCTGCAGTGTGTGTTCGC
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]