GgaEX0001115 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:987110-988514:+
Coord C1 exon
chr21:987110-987232
Coord A exon
chr21:987727-987849
Coord C2 exon
chr21:988347-988514
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCTTTGTGTTCTAGATG
3' ss Score
11.75
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACATCAACGAATGTGAGGATGGCTCTCACTGCTGCCAGCAGGACTGCTACAACTACCCTGGGGGCTACGAGTGTGCCTGCCATGCTGGGTACCGGCTGCGTGCTGATGGCTGTGCCTGCGATG
Seq A exon
ATGTGGATGAGTGCTCCTCCAACAACGGTGGCTGTGAGCACACGTGCCAGAACCAAGTGGGGTCCTTCCAGTGCGGCTGTCCCATTGGGTACAAGCTGGATGGAGACAGGAGGGGCTGCATCT
Seq C2 exon
CTGTAGAGGACTCAGTGGAAGCCCTGGATGCCCGGCGCCCCATTATCCGCCCCATTCCCCATGTGGCCATCCTGCAGGATGAGCTCACCCAGCTCTTCAGCGATGACTACGAAGAGGAGGAGGAAGAGATGGAAGCAAGAGGGGAGCACACCCTGTCTGAAACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.281
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF079748=EGF_2=WD(100=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTACAACTACCCTGGGG
R:
GTTTCAGACAGGGTGTGCTCC
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event