MmuEX0028589 @ mm10
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154253026-154254279:+
Coord C1 exon
chr4:154253026-154253145
Coord A exon
chr4:154253715-154253837
Coord C2 exon
chr4:154254109-154254279
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCATCCCTGTTTGTCTGCAGATG
3' ss Score
9.85
5' ss Seq
CGCGTGAGC
5' ss Score
4.09
Exon sequences
Seq C1 exon
ACATCGACGACTGCGCCAACTCTCCGTGCTGCCAGCAGGTGTGTGCCAACACCCCCGGTGGGTATGAGTGTAGCTGCTTCGCCGGCTACAGACTCAACACAGACGGCTGTGGCTGTGAGG
Seq A exon
ATGTTGACGAGTGTGCCTCTGGTCACAGCGGCTGCGAACACCACTGTTCTAATCTGGCTGGCTCCTTCCAGTGCTTCTGTGAGGCTGGCTACCGGCTGGATGAGGACCGCAGGGGCTGCACGC
Seq C2 exon
CCCTAGAAGAATCCGTGGTGGACCTGGATGGCCAGCTGCCCTTTGTCCGGCCCCTGCCCCACATTGCGGTGCTGGGGGATGAGCTTCCACAACTCTTCCAAGATGACTATGGGGCTGAGGAGGAGGCTGTGGCGGAGCTGCGGGGAGAACACACTCTCACTGAGAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'21-16,'21-15,22-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.4),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGTGTGTGCCAACA
R:
AGTGAGAGTGTGTTCTCCCCG
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types