DreEX0087119 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35447510-35450463:+
Coord C1 exon
chr15:35447510-35447626
Coord A exon
chr15:35448100-35448222
Coord C2 exon
chr15:35450233-35450463
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATAGATGTGTGTTTCTTCAGACA
3' ss Score
5.64
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
ACATGGATGAGTGTGAAAACGGAGAGGCCTGCTGTAGTCATTTCTGTAAAAACTACCCAGGAGGCTACGAGTGCGGCTGTAGACCAGGATACACGCCCAACGGATGCACATGTGACG
Seq A exon
ACATTGACGAGTGTGTGTCTGAGACGTCAGGCTGCTCTCAGTACTGTGTCAACTCTTTGGGCTCTTATGAGTGTTTCTGTCAGGTGGGCTTCAGGCTGGACTATGACCAGAAATCCTGCTCTC
Seq C2 exon
CTCTCTATCAGAGGGAAGTGGAGCAGGAAGAGGAGGATGAAGATCTGTTCGGCAGTGAAGTTGAGCCGGAGGTTCTGCATTTGCCGAACTTACTCTTCCGCCGACCTCCTCAACTGCTGCATTACACCGCTGCTTTACATAGACCGTATGATGATGACACACACTCTTACTACCCAGAAGACACACACGACCCAGAACACAGAGAAGAGCTGACCACCATCAGCAAGAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.346
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGACCAGGATACACGCCCA
R:
TCTCTGTGTTCTGGGTCGTGT
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]