GgaEX6046672 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21903817-21905069:-
Coord C1 exon
chr9:21904947-21905069
Coord A exon
chr9:21904391-21904513
Coord C2 exon
chr9:21903817-21903907
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTTTATGCCTGTTTATTAGATG
3' ss Score
6.17
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACCTGGATGAGTGCGAGACCGGCGAGTCGTGCTGCTCCCAGTTCTGCATCAACTACGTGGGCAGCTACGAGTGCACCTGTAGAGCAGGCTTCCAGCCCAGTGCCGATGGCTGCAGCTGCGACG
Seq A exon
ATGTGGATGAATGTCGTCTTGAGAATGGCAACTGTGACCATATCTGCATTAATTCCCTGGGGTCATACGAATGCGCCTGCAAGGAGAGGTACCGGCTGGGTGCTGACCGGCGCTCCTGCATTG
Seq C2 exon
AAGAAAGAGAAATGTTGTCTTTTCTTCTCTCTTACTTTGCGCATCAAATATTGTTCATCTCTATAAACCAGAAAATGAATTGGATGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'9-10,'9-9,10-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGATGAGTGCGAGACC
R:
TGTTGCATCCAATTCATTTTCTGGT
Band lengths:
214-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]