GgaEX6046672 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19824796-19826309:-
Coord C1 exon
chr9:19826187-19826309
Coord A exon
chr9:19825631-19825753
Coord C2 exon
chr9:19824796-19824942
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTTTATGCCTGTTTATTAGATG
3' ss Score
6.17
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACCTGGATGAGTGCGAGACCGGCGAGTCGTGCTGCTCCCAGTTCTGCATCAACTACGTGGGCAGCTACGAGTGCACCTGTAGAGCAGGCTTCCAGCCCAGTGCCGATGGCTGCAGCTGCGACG
Seq A exon
ATGTGGATGAATGTCGTCTTGAGAATGGCAACTGTGACCATATCTGCATTAATTCCCTGGGGTCATACGAATGCGCCTGCAAGGAGAGGTACCGGCTGGGTGCTGACCGGCGCTCCTGCATTG
Seq C2 exon
TGTTAGGAGGGGACTCAGCAGTGTCGGGCTTCGCAGGGGCTCCGGGGCTGCAGTTCAGAGGTGCCCCCCAGCTCCTGCACTATGTGCTTGGGGCCCCACGTGAGGATGAGGAGCAGCGAGGAGAGCTGACACTGATACACAGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'17-14,'17-13,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGATGAGTGCGAGACC
R:
CTCTCCTCGCTGCTCCTCATC
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]