BtaEX6069283 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50782544-50784715:+
Coord C1 exon
chr16:50782544-50782666
Coord A exon
chr16:50784127-50784249
Coord C2 exon
chr16:50784578-50784715
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCCCCAATGTCTCCCATCAGATG
3' ss Score
9.15
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GGAGAAACCCATGCGCAGACAGGAATGGCGGCTGCATGCACAGGTGCCGGGCACTCCGGGGCCTTGCCCACTGCGAGTGCCGCGCGGGCTACCAGCTGGCAGTAGACCGCAAGGCCTGCGAAG
Seq A exon
ATGTGGATGAATGTGCCACGGGCCTGGCCCAGTGTGCACACGGCTGCCTCAACACGCACGGCTCCTTCAAGTGTGTGTGCAATGCGGGCTACGAGCTGGGTGCTGATGGCCGGCAGTGCTACC
Seq C2 exon
GGATCGAGATGGAGATTGTGAACAGCTGTGAGGCAGACAACGGCGGCTGCTCCCACGGCTGCAGCCACAGCAGCGCGGGCCCCGTCTGCACCTGCCCCCATGGCTACGAGCTGGATGAGGACCAGAGGACGTGTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF146701=FXa_inhibition=WD(100=76.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAACCCATGCGCAGACAG
R:
TGGTCCTCATCCAGCTCGTAG
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]