GgaEX0001111 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:984490-986936:+
Coord C1 exon
chr21:984490-984612
Coord A exon
chr21:984735-984857
Coord C2 exon
chr21:986799-986936
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGGTTTTTGCCATCTGTAGATG
3' ss Score
8.57
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CCTGGAGCCCCTGCGCTCAGAGGAACGGGGGCTGCATGCAGCTCTGCAGGGATGTCCAGGGAGCAGCGCGCTGCGAGTGCCGCCCCGGATACCGGCTGGGACCTGATGGCAGAGCCTGCCAAG
Seq A exon
ATGTGGATGAGTGCTTGGCCGGCCTGGCCACGTGTGCACACCGCTGCCTGAACACCCACGGCTCCTTTATGTGTGCCTGCAACCCGGGCTATGAGCTGGGAGCGGACAGCAGGCAGTGCTACC
Seq C2 exon
GGATAGAAATGGAGATTGTGAGCAGCTGTGAGAGTGGCAACGGTGGCTGCTCCCATTTGTGCCACCACAGCAGCGCCGGCCCCATCTGCACCTGTAACTCAGGCTACCAGCTGCAGGATGACCAGAGGACATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGAACGGGGGCTG
R:
TGCATGTCCTCTGGTCATCCT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]