MmuEX6098386 @ mm9
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:153624931-153626670:+
Coord C1 exon
chr4:153624931-153625053
Coord A exon
chr4:153626238-153626360
Coord C2 exon
chr4:153626533-153626670
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTCTCTCCCTTGCAGATG
3' ss Score
14.8
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GGAGAAGCCCCTGTGCAGACGGCAATGGTGGCTGTATGCATACATGCCAGGAACTCCGGGGCCTTGCCCACTGTGGCTGCCACCCAGGTTACCAGCTTGCTGCAGACCGCAAAGCCTGTGAAG
Seq A exon
ATGTGGACGAATGTGCCTTGGGTCTGGCCCAGTGTGCTCATGGCTGCCTCAACACTCAGGGGTCCTTTAAGTGTGTGTGTCACGCAGGCTATGAGCTGGGTGCTGATGGCCGGCAGTGTTACC
Seq C2 exon
GGATCGAGATGGAGATTGTGAACAGCTGCGAGGCTGGCAACGGAGGCTGCTCACACGGCTGTAGTCACACTAGCACAGGGCCCCTGTGCACCTGCCCTCGTGGTTATGAGCTGGATGAGGACCAGAAGACCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF146701=FXa_inhibition=WD(100=76.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCCCCTGTGCAGA
R:
TGCAGGTCTTCTGGTCCTCAT
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: