BtaEX6070850 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:77491582-77493937:-
Coord C1 exon
chr16:77493884-77493937
Coord A exon
chr16:77492357-77492392
Coord C2 exon
chr16:77491582-77491642
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTTCATTTTTCACAGGTG
3' ss Score
11.2
5' ss Seq
TACGTAAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GACATCCCCCCCGTCCTACTGATGCATCACCCCCTAACGGTGCTGAGGGTTTAG
Seq A exon
GTGCAGGATACATCGTGCTCGTCATTGTTGCTGTAC
Seq C2 exon
TTATTGGCGTTGGATTATTGCTCTGCCTGTACTGCTGTTTTTGCAGACAGAGGAAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397-'16-16,'16-15,18-16=AN
Average complexity
A_S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0248011=Herpes_gE=FE(22.2=100),PF041569=IncA=PU(8.3=26.3)
A:
PF0248011=Herpes_gE=FE(14.8=100),PF041569=IncA=FE(20.0=100)
C2:
PF0248011=Herpes_gE=FE(24.7=100),PF041569=IncA=FE(33.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTACTGATGCATCACCC
R:
CCTTTCTTCCTCTGTCTGCAA
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]