HsaEX6036482 @ hg19

Exon Skipping

Gene

ENSG00000117335 | CD46

Description

CD46 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:6953]

Coordinates

chr1:207956637-207959027:+

Coord C1 exon

chr1:207956637-207956675

Coord A exon

chr1:207958416-207958451

Coord C2 exon

chr1:207958964-207959027

Length

36 bp

Sequences

Splice sites

3' ss Seq

GGAACTGTTTTCTTTCTCAGATG

3' ss Score

8.65

5' ss Seq

TAGGTAAGT

5' ss Score

9.66

Exon sequences

Seq C1 exon

GATATCCTAAACCTGAGGAAGGAATACTTGACAGTTTGG

Seq A exon

ATGTTTGGGTCATTGCTGTGATTGTTATTGCCATAG

Seq C2 exon

TTGTTGGAGTTGCAGTAATTTGTGTTGTCCCGTACAGATATCTTCAAAGGAGGAAGAAGAAAGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000117335-'15-21,'15-20,17-21=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.007 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF0248011=Herpes_gE=FE(16.4=100),PF060117=TRP=PU(7.0=30.8),PF122163=m04gp34like=FE(20.7=100),PF128772=DUF3827=PU(15.6=76.9),PF054546=DAG1=PU(15.9=76.9),PF151761=LRR19-TM=PU(3.4=15.4),PF151021=TMEM154=PU(14.3=69.2),PF0200911=Rifin_STEVOR=PU(9.1=30.8),PF0265610=DUF202=PU(21.4=69.2),PF055686=ASFV_J13L=PU(7.0=30.8)

A:

PF0248011=Herpes_gE=FE(15.1=100),PF060117=TRP=FE(19.3=100),PF122163=m04gp34like=FE(19.0=100),PF128772=DUF3827=FE(17.2=100),PF054546=DAG1=FE(17.5=100),PF151761=LRR19-TM=FE(19.0=100),PF151021=TMEM154=FE(17.5=100),PF145751=EphA2_TM=PU(18.2=83.3),PF0200911=Rifin_STEVOR=FE(25.0=100),PF0265610=DUF202=FE(26.2=100),PF055686=ASFV_J13L=FE(19.3=100),PF126692=P12=PU(23.3=83.3)

C2:

PF0248011=Herpes_gE=FE(28.8=100),PF060117=TRP=FE(36.8=100),PF122163=m04gp34like=FE(36.2=100),PF128772=DUF3827=FE(32.8=100),PF054546=DAG1=FE(33.3=100),PF151761=LRR19-TM=FE(36.2=100),PF151021=TMEM154=FE(33.3=100),PF145751=EphA2_TM=FE(38.2=100),PF0200911=Rifin_STEVOR=FE(47.7=100),PF0265610=DUF202=PD(45.2=86.4),PF055686=ASFV_J13L=FE(36.8=100),PF126692=P12=FE(48.8=100)

Main Inclusion Isoform:

ENSP00000313875