GgaEX1012102 @ galGal4
Exon Skipping
Gene
ENSGALG00000001175 | C4BPA
Description
complement component 4 binding protein, alpha chain precursor [Source:RefSeq peptide;Acc:NP_989995]
Coordinates
chr26:2634205-2635261:+
Coord C1 exon
chr26:2634205-2634396
Coord A exon
chr26:2634717-2634743
Coord C2 exon
chr26:2635195-2635261
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTCATTTACTCTGTTTTTAGGTG
3' ss Score
10.34
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GTGATTCTGAACCTTCTGATTTCTCTCCAGTCATTAGCCATGGTAGAATAATTGAAGGAAAAAAATCTGTATATTCCGAAGGGGATTCGATTACAATTGAATGTTATGCAGGCTACACATTACATGGTGCAGCTCGTATTGAGTATATTGGAGGAGGCAGATGGACTCCAGAAGTGCCAGTTTGCAAGTTAA
Seq A exon
GTGCTTATATTATTGCCATCATCTGTA
Seq C2 exon
TGATCGTGGCAGTTCTGGTGTTCCTGGCAGCCTTCTGGATCTTTAAGAAATTCATTTCACAGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175-'16-20,'16-18,17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=95.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTACATGGTGCAGCTCGT
R:
AAAGATCCAGAAGGCTGCCAG
Band lengths:
120-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]