HsaEX6036482 @ hg38
Exon Skipping
Gene
ENSG00000117335 | CD46
Description
CD46 molecule [Source:HGNC Symbol;Acc:HGNC:6953]
Coordinates
chr1:207783292-207785682:+
Coord C1 exon
chr1:207783292-207783330
Coord A exon
chr1:207785071-207785106
Coord C2 exon
chr1:207785619-207785682
Length
36 bp
Sequences
Splice sites
3' ss Seq
GGAACTGTTTTCTTTCTCAGATG
3' ss Score
8.65
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GATATCCTAAACCTGAGGAAGGAATACTTGACAGTTTGG
Seq A exon
ATGTTTGGGTCATTGCTGTGATTGTTATTGCCATAG
Seq C2 exon
TTGTTGGAGTTGCAGTAATTTGTGTTGTCCCGTACAGATATCTTCAAAGGAGGAAGAAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117335-'35-28,'35-26,39-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAGGAATACTTGACAGTTTGG
R:
CCTTTCTTCTTCCTCCTTTGAAGA
Band lengths:
90-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains