BtaEX6072205 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54151440-54155670:-
Coord C1 exon
chr17:54155463-54155670
Coord A exon
chr17:54155168-54155324
Coord C2 exon
chr17:54151440-54151916
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTGACCCCTCCTAGGAA
3' ss Score
7.18
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCGTCAAGGAGTTCTTTGAACACATTGAACGAGAACGGGCCAAGGACGTGGACCACATGGTCAGGTGGTATCTTGCCATTGGGCCTCTTCTGACCAAAGTTGAGGGGCTGGTCATCCACACCAACACGGGCAAGGCCCCCAAGCTGGCCTCCTACTATGAATACTGGGAAAATAGAATCTACGAGGTCCTGACAAAGCTCATCCTGAA
Seq A exon
GAATCTGCAGTCTTTTAATTCTTTAGTCCTTGGAAACGTCCCTTTGTTCCAAACGGAAACCATCTTGACGGCGCCAGAGATCATTCTGCATCCCAATGCAAATGAGATTGACAAAATGTGTGTTCACTGTGTCCGAAACTGTGTGGAGATGACCAAG
Seq C2 exon
CATTTTGTTCGCTGGATGAATGGCAGCTGCATAGAATGCCCCCCACAGAAAGGAGAGGAGGAAGAACTTGTTACCATCAGCTTTTACAATGATATCTCTCAGAACCCTCAGATAATTGAGCAGGCTGTTATGATCCCCCAAAACGTCCACAGGATTCTGGTCAGTCTTATGAAGTACCTGCAGAAATGGAAGCGCTACCGACCTCTCTGGAAACTGGACAAAGCCATTGTGATGGAGAAATTTGCTGCTAAGAAGCCTCCCTGTGTTGCCTATGATGAGAAGTTGCAGTTCTATGCCAGGATCGCCTCTGAAGTGATGCACCACCTCTTGATCAAGGATGAGCATTGCATCCGCCTTCAGCTCGGACCCCTGGCTAACACCGTGCAGGAAAACGCCAAGTCCTGGGTGGTTTCGCTCGGGAGACTCCTCAATGACTCAGCCAGAGAGGAACTCAATAACCTGCATGAGGAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGTCCTGACAAAGCTCA
R:
TCCAGTTTCCAGAGAGGTCGG
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]