GgaEX0004135 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4892894-4895809:-
Coord C1 exon
chr15:4895645-4895809
Coord A exon
chr15:4894060-4894216
Coord C2 exon
chr15:4892894-4893370
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTTTCCTCTCCCAGGAA
3' ss Score
10.56
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTATTGATGACTTTATAGTCCGATGTAAACAAGCCATCAAGAAGTTTGAATTCCTCGTCCATCAGATTCATGCTAAATCTGGAGACATAAATGACAATCTTCTGCAAATAGGATCAACAAATCTTTTTAAATTTCCACTTTCAAAAAGTGGTGATGTGCTTCCCA
Seq A exon
GAATTTGCAAGCTTTTAATGCAGCTGTTCTTGCAAATGTGCCACTCTTCCAAATAGAAGCTGTTTTGTCTCCTCCAAAGTTTATCTTGCTACCCAATGCCTGTGAAATTGAGAAAATGGCAGGACAATGTATTCGAGACTGTGTTGAGGTCACAAAG
Seq C2 exon
CATTTTGTGCGGTGGATGCATGGCACGTGTATTGAATGCCCTCCTCAGCGTGTTACAGAAGGTGAAGTTATCACATTCAGCTTTTACAGTGATATCTCCCAGAACCCTCTGATAACTGAGCAGGCTGCTCTCATCACTCAGAATGTCCACAGAGTCCTGACTTCTCTCAGCACGTACTTGAACCACTGGGAGAGATATTGTTTTCTGTGGACAGTGGACAAAGATGTGACCATACAGAAGCTTGCTGCTGAAGAGCCTTCCTATGTCACCTTCGATGAAAAGTTGCAGTTCTATGTGAAGGTAGCTCAAGAAGTCACTCAACAGCCCTTGATAAAAGATGAACAATTTATCAGGCTTTGTCTGAGTTCTTTAGTTCCTGCAGTGGAGGATAAAGCTAAGGATTGGATGATTTCCCTTGGAAAGTTGCTTAATGAGTTTGCAAGAAAGGAACTTTTCAGTCTTCAGGAGGAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_MULTIEX4-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(2.6=10.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGTCCATCAGATTCATGCT
R:
TCTGAGTGATGAGAGCAGCCT
Band lengths:
255-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]