HsaEX6069970 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124289380-124298187:+
Coord C1 exon
chr12:124289380-124289587
Coord A exon
chr12:124293344-124293500
Coord C2 exon
chr12:124297711-124298187
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTCTCATCAACCCCTCTTAGGAA
3' ss Score
5.93
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCGTGAAGGAATTTTTTGAACACATTGAGCGAGAAAGGGCCAGCGACGTGGACCACATGGTCCGGTGGTATCTTGCCATTGGACCACTGCTGACCAAAGTTGAGGGCCTGGTCGTCCACACCAACACAGGCAAGGCCCCCAAGCTGGCCTCCTACTACAAATACTGGGAAAAGAAAATTTATGAGGTCCTGACAAAGCTCATCCTGAA
Seq A exon
GAACTTGCAGTCTTTTAATTCTTTGATCCTTGGAAATGTCCCTCTGTTCCACACTGAAACCATTCTGACGGCACCTGAGATCATCCTTCATCCCAACACAAATGAGATCGACAAGATGTGCTTCCATTGTGTCCGGAATTGCGTGGAGATCACCAAG
Seq C2 exon
CATTTTGTTCGTTGGATGAATGGCAGCTGCATAGAATGCCCACCTCAGAAGGGGGAGGAAGAGGAAGTTGTTATAATAAACTTTTACAATGATATCTCTCTGAACCCTCAGATAATTGAACAAGCTGTTATGATCCCCCAAAATGTCCACAGGATTCTGATCAATCTTATGAAGTATCTACAAAAATGGAAGCGGTATCGACCTCTCTGGAAATTGGACAAAGCTATTGTGATGGAGAAATTTGCTGCCAAGAAACCTCCTTGTGTAGCATATGATGAAAAGTTGCAGTTCTATTCCAAGATAGCTTATGAGGTTATGCGCCACCCTCTAATTAAGGATGAGCATTGCATCAGACTTCAGCTCAGGCATCTGGCAAACACAGTGCAGGAAAATGCCAAGTCCTGGGTGATTTCGCTTGGAAAACTTCTCAATGAGTCAGCAAAAGAGGAGCTCTATAATCTCCATGAAGAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACATTGAGCGAGAAAGGGC
R:
CCTCTTCCTCCCCCTTCTGAG
Band lengths:
253-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)