BtaEX6072243 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54065352-54068983:-
Coord C1 exon
chr17:54068766-54068983
Coord A exon
chr17:54065696-54065917
Coord C2 exon
chr17:54065352-54065499
Length
222 bp
Sequences
Splice sites
3' ss Seq
GCCTCCGTCTCCTGTGCCAGGTG
3' ss Score
10.08
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGGCCAGGCTGGAGCGGAATTTTTACCTTACCAAACGTGAGCTGGAGAAGATCCAGAATGAGCTGGCAGCGATCCAGAGGGAACTGGAAGCTCTGGGGGCCAAATATGAGGCGGCCATACTGGAGAAGCAGAAGCTGCAAGAGGAAGCCGAGATCATGGAGAGACGGCTGATCGCGGCCGACAAGCTCATCTCGGGGTTGGGCTCAGAGAATGTCAG
Seq A exon
GTGGCTGAACGATTTGGATGAGCTGATGCACCGGCGGGTGAAGTTGCTGGGCGACTGCCTGCTGTGCGCAGCCTTCCTGAGCTATGAGGGCGCCTTCACGTGGGAATTCCGGGATGAGATGGTCAACCAGGTATGGCAGAACGACATCCTGGAGCGGGGGATACCCCTGAGCCAGCCCTTCCGACTGGAGAACCTGCTCACAGACGACGTGGAGATCAGCAG
Seq C2 exon
GTGGGGCTCCCAGGGGCTGCCCCCTGACGAGCTCTCGGTTCAGAACGGCATCCTCACCACCCGGGCCAGCCGCTTCCCCCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATAAAGAGAAAAGAGGAGAAGAACAACCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'62-66,'62-65,63-66=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(21.3=100)
A:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
C2:
PF127812=AAA_9=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAACGTGAGCTGGAGAAG
R:
TTATCCAGTTGAGGGCCTGCT
Band lengths:
307-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]