DreEX6011102 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27759583-27762094:+
Coord C1 exon
chr5:27759583-27759800
Coord A exon
chr5:27761646-27761867
Coord C2 exon
chr5:27761947-27762094
Length
222 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTGTCAATATGTAGCTG
3' ss Score
7.36
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGGCACGTCTGGAGAGGAATTTCCACCAGAGCAAACGTGAGCTTGAACGAATCCAAAATGAGCTTGGCGCCATCCAGAAAGAACTCAGAGCTCTTGGAGACAAATATGAGGGAGCCATGACAGAGAAACAACTCCTGCAGGAGGAGGCCGAGGTCATGGAGAGAAGACTCGTTGCTGCAGACAAACTCATCTCAGGCCTGGCATCAGAGAACAAGCG
Seq A exon
CTGGATAAAGGACCTGGAGGAGCTGAAGCAGCGGCGAGTGCGTCTTCTGGGAGACTGTCTAATCTGCGCTGCCTTCCTCAGCTATGAAGGAGCCTTCAGCTGGGACTTCCGTAACGAAATGGTGTATAAGGTATGGCAGGCAGACGTCCTGGAAAGAGGCATTCCTCTGAGCCAGCCTTTCCGAATAGAAAACCTGCTCACTGATGAGGTGGAGATCAGCAG
Seq C2 exon
ATGGGGATCTGAAGGTCTCCCTCCAGATGAGCTCTCAGTGCAGAACGGCATCCTGACTACCAGATCTAGCCGCTTCCCCTTGTGCATTGACCCCCAGCAGCAAGCGCTTAACTGGGTCAAAAAAAAGGAGGAGAAGAACAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'65-63,'65-62,66-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(21.3=100)
A:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
C2:
PF127812=AAA_9=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACGTCTGGAGAGGAATT
R:
GGGAAGCGGCTAGATCTGGTA
Band lengths:
295-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]