GgaEX0004157 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4913300-4914857:-
Coord C1 exon
chr15:4914640-4914857
Coord A exon
chr15:4914018-4914239
Coord C2 exon
chr15:4913300-4913447
Length
222 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTCTTTTTCTGTCAGGTG
3' ss Score
11.22
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTAGCAAGGCTAGAACGGAACTATTACTTAAGTAAGAGAGAACTGGAAAAGATAAATGCAGAGCTATCTACACTTCAGGAGGAACTTAAAGCTTTGGGGAACAAATATCAAGAGGCAATAAAAGAAAAGCAACAGTTACAAGAAGAAGCAGAGATTATGCAGAGAAGATTGGAAGCTGCTGACAAGCTCATCTTCGGCTTGAGATCTGAGAACAAGAG
Seq A exon
GTGGGCAAAGGAACTAGAGGAGCTCAAAATGCGAAAGGTGAAGTTGCTTGGAGATTGTCTACTCTGTGCTGCCTTTCTGAGCTATGAAGGAGCATTCAGCTGGGAGTTTCGTAATGAGATGATTTATCAAGTGTGGCAAGAAGACATTCTTTCACGAGAGATTCCTCTCAGCCAGCCTTTTAGGTTAGAAAGCCTCCTGACTAATGAGGTGGAGGTTAGCAG
Seq C2 exon
GTGGGTTTCTCAAGGATTGCCTCCAGATGAGCTCTCCGTCCAAAATGGCATTCTGACAACATATGCAAGCCGCTTCCCACTCTGTATTGACCCACAACAACAGGCTTTAAATTGGATTAAGAAGAAAGAAGAAAAAAATAACCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(21.3=100)
A:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
C2:
PF127812=AAA_9=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCAAGGCTAGAACGGAACT
R:
CAATACAGAGTGGGAAGCGGC
Band lengths:
307-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]