BtaEX6073568 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68294435-68306764:+
Coord C1 exon
chr17:68294435-68294629
Coord A exon
chr17:68294947-68295138
Coord C2 exon
chr17:68306570-68306764
Length
192 bp
Sequences
Splice sites
3' ss Seq
GTCTGATCTGTCTCGCACAGTCA
3' ss Score
6.46
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
AGGTGTCGAGGAACGACTCCTGCTCTGATTTGCCCGAGATCCAGAACGGCTGGAAAACCACTTCCCACACGGAGCTCGTGAGGGGGGCCCGAATCACCTACCAGTGTGACCCCGGCTACGACATCGTGGGGAGCGACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCATTCTGCGAGAAAA
Seq A exon
TCATGTACTGCACCGACCCCGGGGAAGTGGACCACTCGACCCGCTTGATTTCTGACCCTGTGCTGCTGGTGGGCACCACCATCCAGTACACCTGCAACCCAGGCTTCGTGCTGGAGGGGAGCTCGCTCCTGACCTGCTACAGCCGCGAGACCGGCACCCCCATCTGGACCTCTCGCCTGCCCCACTGTGTTT
Seq C2 exon
CGGAGGAGTCCCTGGCCTGTGACAACCCAGGGTTGCCGGAGAACGGGTACCAGATCCTCTACAAACGACTCTACCTGCCTGGAGAGTCCCTCACCTTCATGTGCTACGAGGGCTTCGAGCTGATGGGCGAAGTGACCATTCGCTGCATCCTGGGACAGCCATCGCACTGGAACGGGCCGCTGCCCGTCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-'11-17,'11-16,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACGGCTGGAAAACCACT
R:
GGACTCTCCAGGCAGGTAGAG
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]