RnoEX0079968 @ rn6
Exon Skipping
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50222916-50233532:+
Coord C1 exon
chr12:50222916-50223110
Coord A exon
chr12:50225775-50225966
Coord C2 exon
chr12:50233338-50233532
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTCTTCTCTTGGCAGTTA
3' ss Score
9.63
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACCACTTCCCACACGGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGCGACCCTGGCTACGACATCGTGGGGAGTGACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCGTTTTGTGAAAAGA
Seq A exon
TTATGTACTGTACTGACCCCGGGGAGGTAGAGCACTCCACCCGCCTCATCTCAGACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACACCTGTAGCCCTGGGTTTGTGCTTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCGAGACAGGAACTCCCATCTGGACGTCTCGCCTGCCCCACTGTGTCT
Seq C2 exon
CCGAGGAGTCCCTGGCGTGTGACAACCCAGGGCTGCCTGAAAACGGATACCAGATCCTGTATAAGCGGTTGTACCTACCCGGAGAGTCCCTCACGTTCATGTGCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGTCCCATTGGAGCGGGCCCCTGCCCATCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCACATACCAGTGCGAC
R:
GATGGTCACTTCGCCCATGAG
Band lengths:
246-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]