MmuEX0041888 @ mm10
Exon Skipping
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112428376-112438596:-
Coord C1 exon
chr5:112438402-112438596
Coord A exon
chr5:112436283-112436474
Coord C2 exon
chr5:112428376-112428570
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATGTACTCTTCTCTTGGCAGTTA
3' ss Score
8.73
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGTGACCCAGGCTATGACATTGTGGGGAGTGACACCCTCACCTGCCAATGGGACCTCAGTTGGAGCAGCGACCCGCCGTTTTGTGAAAAAA
Seq A exon
TTATGTACTGTACTGACCCCGGGGAGGTGGAGCACTCCACCCGCCTCATTTCAGACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACACCTGTAGCCCTGGCTTTGTGCTTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCGAGACAGGAACTCCCATCTGGACATCTCGCCTGCCCCACTGTGTCT
Seq C2 exon
CTGAGGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCCCGGAGAGTCCCTCACCTTCATGTGCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGTCCCATTGGAGTGGGCCCCTGCCCATCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTCAGACTTGCCTGAA
R:
CAGGTACAGCCGCTTGTACAG
Band lengths:
255-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types