BtaEX6076004 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59529468-59533828:+
Coord C1 exon
chr20:59529468-59529687
Coord A exon
chr20:59531466-59531671
Coord C2 exon
chr20:59533625-59533828
Length
206 bp
Sequences
Splice sites
3' ss Seq
TCCCCACCTGACCTCAACAGGGG
3' ss Score
7.06
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGAGGATGGGCCCTTCTGCAGAACTGCCATCTGGGACTGGATTTCATGGATGAGCTAATGGATATAATTATAGAAACTGAGTTTGTACATGACTCGTTCCGCCTGTGGATGACAACCGAGGTTCACAAGCAGTTTCCCATCACCCTCCTTCAGATGTCCATCAAATTTGCCAATGAGCCCCCCCAGGGCCTCCGGGCAGGACTGAAAAGAACATATGGTG
Seq A exon
GGGTGAGCCAGGACCTGCTGGATGTGAGCGCTGTGGCCCAGTGGAAGCCCATGCTGTATGCCGTGGCTTTCCTGCACTCAGTGGTCCAGGAGAGGCGCAAGTTCGGGCCCCTGGGTTGGAACATCCCCTACGAATTTAACCAAGCCGATTTTAATGCCACAGTGCAGTTCATCCAGAACCACTTAGATGACATGGATCTCAAAAAG
Seq C2 exon
GGTGTCTCCTGGACCACTGTCCGCTACATGATAGGAGAGATACAGTATGGAGGCAGAGTCACCGATGACTATGACAAGAGACTATTGAACACACTTGCTAAAGTTTGGTTCAGTGAAAATATGTTTGGACCAGATTTCAGCTTTTACCAAGGCTACAATATTCCAAAATGCAGCACAGTTGATAACTATCTTCAGTATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'74-74,'74-73,75-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
PF0302810=Dynein_heavy=FE(9.8=100)
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCGAGGTTCACAAGCA
R:
TCAACTGTGCTGCATTTTGGA
Band lengths:
292-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]