GgaEX6020555 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76697130-76699193:+
Coord C1 exon
chr2:76697130-76697349
Coord A exon
chr2:76697967-76698172
Coord C2 exon
chr2:76698990-76699193
Length
206 bp
Sequences
Splice sites
3' ss Seq
AATTCATCTATAACCAATAGGTG
3' ss Score
5.33
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGAGGTTGGGCACTTTTGCAGAACTGCCACCTTGGACTTGACTTTTTGGATGAGTTGATGGACACTATAATTGAGGCCGAGACTGTCCATGAACGCTTTCGACTGTGGATGACAACTGAAATACACAAACAGTTCCCCATCAGCCTGCTCCAAATGTGTATTAAGTTTACCAATGAACCACCACAGGGACTGAGAGCTGGACTAAAGAGAACATACAGTG
Seq A exon
GTGTCAGCCAGGATTTGCTAGATGTCAGTGACATGGTGCAGTGGAAACCCATGCTGTATGCTGTAGCTTTTCTACACTCCACTACTCAAGAAAGACGCAAATTTGGATCTCTGGGCTGGAATATACCCTATGAGTTTAACCAAGCTGATTTCAATGCCACTGTGCAGTTCATTCAAAACCACTTGGATGGCACAGATTCCAAGAAG
Seq C2 exon
GGGATTTCCTGGAGTACTGTTTGTTACATGATAGGTGAAATCCAGTATGGTGGCCGTGTGACAGATGACTATGACAAAAGGCTGATGAACACCTTTGTTAAGGTCTGGTTCAGTGAAAAAATGTTCAGTCAAGAATTCTGCTTCTACAAAGGATATGGCATACCCAAATGTACTATGGTGGATCAATACCTTCAGTACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'75-82,'75-81,76-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
PF0302810=Dynein_heavy=FE(9.8=100)
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCCACCTTGGACTTGAC
R:
AGGTGTTCATCAGCCTTTTGTCA
Band lengths:
293-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]