MmuEX6053025 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28374745-28379108:+
Coord C1 exon
chr15:28374745-28374964
Coord A exon
chr15:28378038-28378243
Coord C2 exon
chr15:28378905-28379108
Length
206 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCTGACCACGACAGGTG
3' ss Score
8.05
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGAGGATGGGTACTTCTACAGAACTGCCACCTGGGACTTGACTTCCTGGATGAGCTAATGGACGTAGTTACAGAAACGGAGACTGTGCATGACACTTTCCGCCTGTGGATCACCACCGAGGTTCACAAGCAGTTCCCCATCACTCTCCTTCAGATGTCCATCAAGTTTGCCAATGAGCCACCTCAGGGCCTCCGGGCGGGACTGAGAAGGACATATGGTG
Seq A exon
GTGTGAGCCAGGACCTACTGGATGTGAGTGTGGGGGCCCAGTGGAAGCCCATGCTATATGCGGTGGCCTTCCTACACTCCACTGTCCAGGAGCGGCGCAAGTTCGGTCCTCTGGGGTGGAATATCCCTTACGAATTTAACCAAGCAGACTTCAATGCCACGGTGCAGTTCATTCAAAATCACCTAGATGATATGGATGTCAAGAAG
Seq C2 exon
GGTGTATCCTGGACCACTGTCCGCTACATGATAGGAGAGATTCAGTATGGAGGCAGAGTCACTGATGACTACGATAAGAGGTTGCTGAACACATTTGCAAAGGTTTGGTTCAGTGAAAACATGTTTGGACCAGATTTCACCTTTTACCAAGGATACAACATTCCAAAATGCAGTACAGTGGATGGCTATCTTCAGTACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'71-72,'71-71,72-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
PF0302810=Dynein_heavy=FE(9.8=100)
C2:
PF0302810=Dynein_heavy=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGAGGTTCACAAGCAGTT
R:
AGCCATCCACTGTACTGCATT
Band lengths:
294-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: