BtaEX6076016 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59468535-59470893:+
Coord C1 exon
chr20:59468535-59468766
Coord A exon
chr20:59470154-59470268
Coord C2 exon
chr20:59470717-59470893
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCTTGGATTTTTAATCTCAGAAT
3' ss Score
5.95
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
TGTCTGAACACTTCCTCTCTGCCTATGATATTGACTGCAGTTTGGAAACCAAGAAGGAAGTCGTTCAGTGCATGGGCTCCTTCCAGGATGGAGTAGCTGAAAAGTGTGTTGATTATTTCCAGAGATTCCGACGTTCTACCCATGTGACGCCCAAATCGTACCTTTCCTTTATTCAGGGCTATAAGTTCATATATGGAGAGAAGCATGTCGAGGTTCAAACTCTGGCCAACAG
Seq A exon
AATGAATACTGGGTTGGAAAAGCTAAAAGAAGCTTCGGAGTCTGTTGCAGCTCTGAGCAGAGAACTGGAAGTGAAAGAAAAGGAGCTCCAAGTGGCCAATGATAAAGCCGACATG
Seq C2 exon
GTCTTAAAAGAAGTGACAATGAAAGCACAGGCTGCTGAAAAGGTCAAAGCTGAGGTCCAGAAGGTGAAGGACAAAGCCCAGGCCATTGTCGACAGCATCTCTAAAGATAAAGCCATTGCTGAGGAAAAACTGGAAGCAGCAAAGCCAGCATTAGAAGAAGCAGAAGCAGCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'58-58,'58-57,59-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(23.4=82.1),PF127772=MT=PU(0.3=1.3)
A:
PF127772=MT=FE(10.9=100)
C2:
PF127772=MT=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGTTCTACCCATGTGACG
R:
TGGCTTTGCTGCTTCCAGTTT
Band lengths:
251-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]