DreEX0027459 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9289451-9295555:+
Coord C1 exon
chr16:9289451-9289682
Coord A exon
chr16:9293469-9293583
Coord C2 exon
chr16:9295379-9295555
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATGGTGTATTCTTTCAATAGGAT
3' ss Score
9.03
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TGTCAGAACACTTCCTGTCCACGTATGACATTGACTGCACATTGGAGGTAAAGAGTGAAGTGGTTCAGTGCATGGGTTCTTTTCAGGATGGGGTGGCAGAAAAGTGTGCAGATTATTTTCAGAGGTATCGACGTTCCACGCATGTCACACCCAAATCCTACCTGTCCTTCATCCATGACTACAAGACCATCTACAAAGAGAAGCACTCAGAGGTCCAGACTCTCGCTAACAG
Seq A exon
GATGAACACCGGGCTCCAGAAACTCAAGGAGGCATCTGAATCTGTTGCTGCTCTCAGCAAAGAGCTGGAGGTGAAGGAGAAAGAGCTTCAAATAGCCAATGCGAAGGCTGATATG
Seq C2 exon
GTGCTGAAGGAGGTGACCGTCAAGGCTCAAGCCGCCGAAAAGGTCAAAGTGGAAGTGCAAAAAGTCAAAGATAAAGCGCAGGCTATAGTTGACAGCATTTCTGCGGACAAGGCCATTGCCGAAGAGAAACTGGAGGCAGCCAGACCTGCTTTAGAAGAGGCTGAGGCAGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'24-26,'24-25,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(23.4=82.1),PF060089=Laminin_I=PU(15.6=24.4),PF127772=MT=PU(0.3=1.3)
A:
PF060089=Laminin_I=FE(31.1=100),PF127772=MT=FE(10.9=100)
C2:
PF060089=Laminin_I=FE(47.5=100),PF127772=MT=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGTGGCAGAAAAGTGTG
R:
TGTCCGCAGAAATGCTGTCAA
Band lengths:
254-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]