MmuEX6053041 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28317516-28320639:+
Coord C1 exon
chr15:28317516-28317747
Coord A exon
chr15:28320198-28320312
Coord C2 exon
chr15:28320463-28320639
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCTGGATTTTTCAACTCCAGAAT
3' ss Score
6.55
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
TGTCGGAACACTTCCTCTCATCCTATACCATTGACTGCACAGCGGAGATCAAGAAGGAATTGGTCCAGTGCATGGGCTCTTTTCAGGATGGGGTAGCTGAGAAATGCGCCGATTACTTCCAGAGGTTCCGGCGCTCTACCCACGTGACGCCCAAATCCTACCTCTCCTTTATTCAGGGCTATAAATTCATATATGAAGAAAAGCACATGGAAGTGCAGAGCCTGGCCAACAG
Seq A exon
AATGAATACTGGATTGGAAAAGCTAAAAGAAGCGTCAGAATCGGTGGCAGCCTTGAGCAAAGAACTGGCAGGAAAAGAGAAGGAGCTGCAGGTGGCCAATGAGAAAGCAGACACG
Seq C2 exon
GTTTTAAAGGAAGTCACAATGAAGGCACAGGCTGCAGAGAAGGTCAAAGCTGAGGTGCAGAAGGTAAAGGACAAAGCACAGGCCATTGTCGACAGCATCTCCAAGGACAAAGCCATCGCAGAAGAGAAATTAGAGGCAGCAAAGCCAGCCCTAGAAGAGGCGGAAGCCGCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'55-56,'55-55,56-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(23.4=82.1),PF060089=Laminin_I=PU(15.6=24.4),PF127772=MT=PU(0.3=1.3)
A:
PF060089=Laminin_I=FE(31.1=100),PF127772=MT=FE(10.9=100)
C2:
PF060089=Laminin_I=FE(47.5=100),PF127772=MT=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGCCCAAATCCTACCTCT
R:
CTCTTCTAGGGCTGGCTTTGC
Band lengths:
247-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: