BtaEX6076020 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59440683-59455961:+
Coord C1 exon
chr20:59440683-59440855
Coord A exon
chr20:59451182-59451312
Coord C2 exon
chr20:59455808-59455961
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTGTATTCTAGATC
3' ss Score
12.27
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGAAACATCTGAGGAGGCTGATGCTGAGATGCCCAAAATTTATGAGCCTGTTGAATCTTTTGATCACCTGAAGGAGCGTTTGAATATGTTCTTGCAGCTCTATAACGAGAGCATCCGTGGTGCAGGCACGGACTTGGTGTTCTTTGCAGATGCCATGGTCCACTTGGTCAAG
Seq A exon
ATCTCACGTGTCATTCGTACTCCCCGGGGAAATGCCCTCCTGGTTGGGGTGGGCGGATCGGGGAAGCAGAGCTTAACAAGGTTGGCTTCATTCATCGCTGGCTACACTTCCTTCCAGATCACTCTGACAAG
Seq C2 exon
ATCCTACAACACATCAAATCTGATGGAAGACCTGAAGACATTGTATAGAACAGCTGGTCGGCAAGGCAAAGGCATCACTTTTATTTTCACAGACAATGAAATTAAAGATGAGTCATTTTTGGAATATATGAATAATGTTTTATCATCGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'53-54,'53-53,54-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(8.4=39.7)
A:
PF127802=AAA_8=FE(15.8=100)
C2:
PF127802=AAA_8=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTGAGGAGGCTGATGCT
R:
AAAGTGATGCCTTTGCCTTGC
Band lengths:
249-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]