DreEX6039497 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9270312-9277250:+
Coord C1 exon
chr16:9270312-9270484
Coord A exon
chr16:9275797-9275927
Coord C2 exon
chr16:9277097-9277250
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTCTATTACTTTATTCCAGATT
3' ss Score
8.66
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GCGATGAACCAGAAGAAACAGATTTCGACATGCCAAAAGTGTACGAGCCCATTGAATCTTTTGACAGTCTAATGGAGAGGCTGAACATGTTCTTGAGTCATTTCAATGAGAGCATCAGAGGAGCAAGCATGGATATGGTTTTCTTCAGGGATGCCATGATTCATTTGATTAAG
Seq A exon
ATTTCTCGAATCATCAGGACCCCACGGGGCAATGCGCTCCTAGTAGGTGTGGGGGGGTCTGGAAAGCAAAGTCTGACAAGGCTGGCATCTTTCATCGCTGGCTACAAGACTTTCCAGATTACACTCACTCG
Seq C2 exon
TTCCTACAACACCGCTAACCTGATGGAGGACCTGAAGGGCTTGTACAGGACTGCCGGACAACAGGGCAAAGGCATTAGCTTTATTTTCACTGACAACGAGATCAAGGATGAATCCTTCCTGGAGTACATGAACAACGTCCTTTCATCAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(8.4=39.7)
A:
PF127802=AAA_8=FE(15.8=100)
C2:
PF127802=AAA_8=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAAGTGTACGAGCCCAT
R:
TCCTTGATCTCGTTGTCAGTGA
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]