MmuEX6053045 @ mm10
Exon Skipping
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28372243-28383729:+
Coord C1 exon
chr15:28372243-28372415
Coord A exon
chr15:28378331-28378461
Coord C2 exon
chr15:28383576-28383729
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTTCTACTTTCTATTATAGATC
3' ss Score
10.96
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGAAACACCTGAGGAGGCTGATGCTGAAATGCCAAAGCTTTATGAGCCAATCGCATCCCTTAACCACCTGCGAGAGCGTCTGAGTGTGTTCCTGCAGCTCTATAACGAGAGCATCCGTGGCACTGGCATGGACATGGTGTTCTTCATAGATGCAATGGTTCACTTAGTCAAG
Seq A exon
ATCTCTCGAGTCATACGCACTCCTCGGGGAAATGCCCTTCTGGTTGGTGTGGGTGGATCAGGAAAGCAGAGCTTGACAAGGTTGGCTTCATTCATCGCTGGCTATACCTCTTTCCAGATCACTCTGACAAG
Seq C2 exon
ATCCTACAACACCTCGAACCTGATGGAAGATCTGAAGGTCTTGTACAGGACTGCTGGCCAGCAAGGCAAAGGGATCACTTTTATTTTCACAGACAATGAGATTAAAGAGGAGTCGTTTCTGGAGTACATGAACAATGTCCTGTCATCGGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'48-64,'48-53,59-64=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(8.4=39.7)
A:
PF127802=AAA_8=FE(15.8=100)
C2:
PF127802=AAA_8=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGCGTCTGAGTGTGTTC
R:
GCCCGATGACAGGACATTGTT
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types