BtaEX6076023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59432166-59437622:+
Coord C1 exon
chr20:59432166-59432379
Coord A exon
chr20:59434021-59434244
Coord C2 exon
chr20:59437424-59437622
Length
224 bp
Sequences
Splice sites
3' ss Seq
GACTTTTTTTCCTCTTTCAGGTG
3' ss Score
13.44
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GTTACTAATGAGATAGTACGACAGCTGCTGGAACAGAATGGATTTTATAATCTAGAGAAGCCTGGGGAGTTTACCAGCATTGTGGACATCCAGTTTTTAGCAGCTATGATCCATCCTGGGGGTGGACGCAATGATATACCACAGCGACTCAAGAGGCAGTTCTCGATATTTAACTGCACGCTACCCTCTGATGCTTCTGTGGACAAGATCTTTG
Seq A exon
GTGTGATTGGGGTAGGTTATTACTGTACCCAGAGGGGTTTCTCAGAAGAAGTGAGAGATTGGGTGACGAAGTTGGTGCCCCTGACACGTCGACTATGGCAAATGACTAAGATTAAAATGCTCCCAACCCCTGCAAAATTCCATTACGTTTTTAACCTTCGAGATCTTTCTAGGATCTGGCAGGGAATGCTGAACACTACTCCAGAGGTTATCAAGGAACCAGAC
Seq C2 exon
GAACTGTTAAGGCTGTGGAAGCATGAGTGTAAACGAGTTATTGCTGATCGCTTCACGGCATCTGATGACGTGACCTGGTTTGATAAGACTTTAGTCAGCTTGGTGGAGGAGGAGTTTGGTGAAGAGAAAAAACTCTTGGTGGATTGTGGAACTGACACTTACTTTGTGGATTTCTTGAGGGATGCACCTGAAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'50-51,'50-50,51-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.3=100)
A:
PF127752=AAA_7=FE(27.4=100)
C2:
PF127752=AAA_7=PD(3.0=11.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGATCCATCCTGGGGGT
R:
TAGCTTCAGGTGCATCCCTCA
Band lengths:
308-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]