DreEX6039498 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9264890-9269734:+
Coord C1 exon
chr16:9264890-9265103
Coord A exon
chr16:9267367-9267590
Coord C2 exon
chr16:9269536-9269734
Length
224 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTTTTTCCCCATAGGCG
3' ss Score
12.33
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTCACAAATGAAATAGTTCGGCAGCTGATGGAGCAAAATGGCTTCTTCAACCTGGAAAAACCAGGAGAATTCACCAACATTGTGGATATACAGTTCTTAGCGGCTATGATCCATCCTGGAGGGGGGCGGAATGATGTTCCGCAGAGACTGAAAAGACAGTTTTCAATTTTCAACTGTACTCTTCCATCGAATGCCTCCATAGACAAGATCTTTG
Seq A exon
GCGTGATAGGCACAGGTCATTACTGTTCCCATCGAGGGTTTTCAGAGGAAGTACGCAATACAGTGGGCAGGCTGGTTCCACTGACCCGAAGACTGTGGCAAATGACAAAGGTTAAAATGCTGCCCACTCCTGCTAACTTCCACTACATTTTTAACCTGCGTGACCTCTCCCGCATCTGGCAGGGAATGCTTGGTGTGACTGCAGAGGTCATCAGTACACCTCAA
Seq C2 exon
TTATTACTACAGCTGTGGAAGCATGAATGCAAACGTGTTATTGCCGACCGGTTTACTGCCCCAGAGGACGTGGCCTGGTTTGACAGCACACTTGCCAAGCTGGTGGAAGAACAGCTTGGGGAAGAAGAACGAGAGGTTGTGGATCTCGGGGTAGATTCTTACTTTGTGGACTTTCTTAGAGATGCACCCGAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.1=100)
A:
PF127752=AAA_7=FE(27.2=100)
C2:
PF127752=AAA_7=PD(2.9=11.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTTCGGCAGCTGATGGAG
R:
AAGTGTGCTGTCAAACCAGGC
Band lengths:
295-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]