MmuEX6053048 @ mm10
Exon Skipping
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28366144-28370553:+
Coord C1 exon
chr15:28366144-28366357
Coord A exon
chr15:28367686-28367909
Coord C2 exon
chr15:28370355-28370553
Length
224 bp
Sequences
Splice sites
3' ss Seq
ATTATCCTCCCTCTTCCCAGGTG
3' ss Score
10.98
5' ss Seq
GACGTACGT
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTTACTAATGAGATTGTCCGACAGCTGATGGAACAAAGTGGGTTCTATAACCTGGAGAAGCCTGGAGAGTTCACTAGCATTGTGGACATCCAGTTCTTGGCAGCCATGATCCATCCTGGGGGTGGACGCAATGACATACCACAGCGCTTGAAGAGACAGTTCTCCATATTCAACTGTACCTTGCCTTCAGATGCTTCCATGGACAAGATCTTTG
Seq A exon
GTGTGATTGGGGCAGGCTACTACTGTGCCCAGCGGGGCTTCTCGGAGGAAGTTCAAGATGCTCTGATAAAGCTGGTACCCCTGACGCGCCGTCTGTGGCAGATGACCAAACTGAAGATGCTCCCAACGCCTGCGAAATTCCACTATGTGTTCAACCTTCGAGACCTCTCCAGGATCTGGCAGGGCATGCTGAACATCACTTCAGAGGTCATCAAAGACACAGAC
Seq C2 exon
GAACTCCTCAGGCTGTGGAAGCATGAGTGTAAACGTGTGATAGCTGACCGCTTTAGCATGTCCAGCGATGTGACCTGGTTCGATAAGGCTGTTGTCAGTTTGGTAGAGGAGGAGTTTGGTGAAGAGAAAGCACCTGTAGTGGATTGTGGAGTTGATGCTTATTTTGTGGATTTCTTGAGGGATGCACCAGAAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'45-61,'45-50,56-61=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.0=100)
A:
PF127752=AAA_7=FE(27.1=100)
C2:
PF127752=AAA_7=PD(2.9=11.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGGACGCAATGACATAC
R:
TAGCTTCTGGTGCATCCCTCA
Band lengths:
292-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types