BtaEX6076026 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59419956-59423224:+
Coord C1 exon
chr20:59419956-59420157
Coord A exon
chr20:59421979-59422121
Coord C2 exon
chr20:59423090-59423224
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTCTGTTCATCTCAGGCA
3' ss Score
8.48
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAGCAAGGCGGAGAGGTCACGGCGGAGCACCTAGGCAGACTGTACGTCTTCTCACTGATGTGGAGCGTGGGGGCGGTGCTGGAACCGGACGGCCGGCGCCGCGTGGAGCAGTGGCTGCGCTCCCGGGAGATGCTGGCCCTGGACCTGCCGCCCCTCGAGGGGCCTGACGACTCCATGTTTGACTATTACGTTGGGTCCGATG
Seq A exon
GCAAATGGATGCACTGGAACACATGTACTGAGGAATATGTCTATCCATCTAACACCACCCCAGAATATGGCTCCATCCTGGTGCCAAATGTTGACAACGTGAGAACCGACTTCTTAATTAAAACCATTGCTAAACAGGGCAAG
Seq C2 exon
GCTGTGCTGTTAATTGGTGAACAAGGAACAGCCAAGACAGTCATAATCAAAGGATTTATGTCGAAATATGATCCTGAAAGCCACGTGATCAAGAGTCTGAACTTTTCTTCTGCAACCACCCCACTGATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'46-46,'46-45,47-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(10.4=58.3)
C2:
PF127752=AAA_7=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCACTGATGTGGAGCGTG
R:
TCAGACTCTTGATCACGTGGC
Band lengths:
254-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]