GgaEX6020579 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78563042-78564727:+
Coord C1 exon
chr2:78563042-78563246
Coord A exon
chr2:78563739-78563881
Coord C2 exon
chr2:78564593-78564727
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTCTTTCCTATTAGGTA
3' ss Score
9.82
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAGCAAGGAGGAGAACTGACTGCAAAATACTTGGAAAGGCTGTATATCTTCTCTCTTATGTGGAGCATAGGAGCATTGCTAGAACTGGAAGACAGATGCAAAATGGAGCACTGGCTTCGAAACTGTGCAACAGTAAAGCTTGATCTTCCCTGCATTCCAGAAGGCAGTGAAGATACCATGTTTGATTATTATGTGGCATCTGACG
Seq A exon
GTAATTGGATGCACTGGAATACACGTGTTGAAGAGTATGTATATCCTAGTAGTAGCACGCCAGAGTATAGCTCCATTCTTGTGCCAAATGTTGACAACGTGAGAATGAATTTCCTTATTGAAACCATTGCTAAACAGGGCAAG
Seq C2 exon
GCTGTTCTACTAATTGGTGAGCAAGGAACTGCAAAGACTGTTATTATCAAATGTTTTATGTCGAAATATAACCCTGAAAGCCACATGGCTAAGAGTTTGAATTTTTCTTCTGCAACTACCCCATTAATTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'50-54,'50-53,51-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(10.4=58.3)
C2:
PF127752=AAA_7=FE(16.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGAGGAGAACTGACTGC
R:
ACAGTCTTTGCAGTTCCTTGCT
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]