DreEX6039502 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9254491-9260658:+
Coord C1 exon
chr16:9254491-9254695
Coord A exon
chr16:9257944-9258086
Coord C2 exon
chr16:9260524-9260658
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTATTTTTCACAGGCC
3' ss Score
10.03
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGCAGGGAGGAGAGCTGTCTCGTGAGCACATGGAGCGTCTCTATGTCTTTGCTCTTATGTGGAGTGTGGGAGCATTATTGGAACTGGATGATCGAATGAAGTTGGAGAGATGGCTCCGTAACCATGACAGCATCCACTTGGATCTTCCCAATATCCCTCCCCATAGCGAGGACACCATGTTCGACTTTTATGTCACTAATGATG
Seq A exon
GCCACTGGGTTCACTGGAATACCAGAGTGGAAGAGTATATATATCCACCTGACTCCACACCAGAGTATGGCTCCATTTTAGTGCCCAATGTAGACAATGTTCGTACTGACTTCCTCATCCAGACAATTGCAAAACAGGGCAAG
Seq C2 exon
GCTGTGCTTTTGATAGGGGAGCAGGGCACTGCCAAAACCGTCATCATCAAAGGGTACATGTCCAAATATGACCCAGAGTCCCATACTGCCAAGAGTCTCAATTTCTCCTCTGCCACCACACCTCTCATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.021 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(11.0=62.5)
C2:
PF127752=AAA_7=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTTATGTGGAGTGTGGGA
R:
GCAGTATGGGACTCTGGGTCA
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]