BtaEX6076029 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59405893-59417091:+
Coord C1 exon
chr20:59405893-59406046
Coord A exon
chr20:59413674-59413820
Coord C2 exon
chr20:59416850-59417091
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCTGGATTTACTTGGTATAGATT
3' ss Score
2.37
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTTGAAGAAGCTGGTTTAATCAACCATCCTCCTTGGAAACTGAAAGTCATCCAGCTGTTTGAAACACAGAGAGTGCGGCATGGAATGATGACCCTAGGGCCAAGTGGGGCAGGGAAGACCACCTGCATCCATACCTTGATGAGAGCCCTGACAG
Seq A exon
ATTGTGGAAAACCACATCGGGAAATGAGGATGAATCCTAAAGCGATTACAGCCCCACAGATGTTCGGTCGGCTTGATGTGGCGACAAATGATTGGACCGATGGGATATTTTCTACTCTTTGGAGGAAAACATTGAGGGCTAAGAAAG
Seq C2 exon
GGGAGCATATCTGGATAGTTCTTGATGGTCCAGTAGATGCCATCTGGATTGAAAATCTGAATTCCGTTTTGGATGATAACAAAACACTAACCCTTGCCAATGGCGATCGGATTCCCATGGCTCCAAACTGCAAGATTGTTTTTGAACCTCATAACATTGACAACGCTTCGCCTGCTACCGTCTCAAGAAATGGGATGGTTTTCATGAGTTCTTCTATCCTTGATTGGAGCCCTATTCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'42-42,'42-41,43-42=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.5=46.2)
A:
PF077289=AAA_5=FE(35.8=100)
C2:
PF077289=AAA_5=PD(46.0=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGACCCTAGGGCCAAGT
R:
TTGAGACGGTAGCAGGCGAAG
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]